Required Softwares
Before the workshop, we suggest participants to install these softwares in their laptop:
- Visual Studio Code
- We will use VS Code to access the Virtual Machine (VM) that we have prepared for the tutorial and also editing and manipulating codes.
- Cytoscape
- We will use Cytoscape to explore and visualize GCF networks generated from the workflow.
Please refer to the instructions on each website to install those 2 softwares.
Accessing the virtual machine
The Virtual Machine will be available during the workshop day. The server will be available at this address: 20.223.189.159
To access the server, we have generated a user account based on your emails. To access over ssh you can do so via:
ssh <username>@20.223.189.159
Change the <username> with you email account id. Then you will be asked for a password which we will provide during the workshop.
We recommend to connect using Remote - SSH extension in VS Code. You can find a short video tutorial here: https://youtu.be/rh1Ag41J6IA
If you can’t access the VM, please send email to matinnu@biosustain.dtu.dk.