SeqFu2
Summary of Seqfu results from project: [mq_saccharopolyspora]
Description
Seqfu2 provides a sequence statistic overview of the genomes in the dataset.
Genome Statistics Overview
| Axis | Description |
|---|---|
#Seq |
The number of sequences in the input file. |
Total bp |
The total number of base pairs in all sequences. |
Avg |
The average length of the sequences in base pairs. |
N50, N75, N90 |
The length of the shortest sequence such that the sum of the lengths of all sequences equal to or greater than it is at least 50%, 75%, or 90% of the total length of all sequences. |
auN |
area under the Nx curve. |
Min |
The length of the shortest sequence in base pairs. |
Max |
The length of the longest sequence in base pairs. |
These statistics can be useful for assessing the quality and characteristics of a set of sequences, such as a genome assembly or a set of reads.
References
- Telatin, A., Birolo, G., & Fariselli, P. SeqFu [Computer software]. GITHUB: https://github.com/telatin/seqfu2