Roary
Summary of Roary results from project: [mq_saccharopolyspora]
Description
Rapid large-scale prokaryote pan genome analysis.
Pangenome Statistics
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Pangenome Distribution
| Pangenome Category | Description | Counts |
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Pangene Distribution across phylogenetic tree
Pangene Tables
Core Genes
| Gene | Non-unique Gene name | Annotation | No. isolates | No. sequences | Avg sequences per isolate | Genome Fragment | Order within Fragment | Accessory Fragment | Accessory Order with Fragment | QC | Min group size nuc | Max group size nuc | Avg group size nuc | locus_tag | pangenome_class | |
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Shell Genes
| Gene | Non-unique Gene name | Annotation | No. isolates | No. sequences | Avg sequences per isolate | Genome Fragment | Order within Fragment | Accessory Fragment | Accessory Order with Fragment | QC | Min group size nuc | Max group size nuc | Avg group size nuc | locus_tag | pangenome_class | |
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References
- Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill, 'Roary: Rapid large-scale prokaryote pan genome analysis', Bioinformatics, 2015;31(22):3691-3693 doi:10.1093/bioinformatics/btv421