MASH

Summary of MASH results from project: [mq_saccharopolyspora]

Description

Fast genome and metagenome distance estimation using MinHash

Hierarchical Clustering based on MASH distances

Estimate Number of Clusters

Estimated number of clusters: 8

MASH Clustermap

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References

• Mash: fast genome and metagenome distance estimation using MinHash. Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM. Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x.

• Mash Screen: high-throughput sequence containment estimation for genome discovery. Ondov BD, Starrett GJ, Sappington A, Kostic A, Koren S, Buck CB, Phillippy AM. Genome Biol. 2019 Nov 5;20(1):232. doi: 10.1186/s13059-019-1841-x.