GECCO
Summary of BGCs detected by GECCO in each genome for: [mq_saccharopolyspora]
Description
GECCO is a fast and scalable method for identifying putative novel Biosynthetic Gene Clusters (BGCs) in genomic and metagenomic data using Conditional Random Fields (CRFs).
GECCO Summary Result
| cluster_id | genome_id | average_p | max_p | type | length | probability_score |
|---|---|---|---|---|---|---|
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Overlap with antiSMASH BGCs
| cluster_id | genome_id | average_p | max_p | type | length | probability_score | antismash_target | overlap_length | overlap_proportion | is_overlapping |
|---|---|---|---|---|---|---|---|---|---|---|
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References
- Accurate de novo identification of biosynthetic gene clusters with GECCO. Laura M Carroll, Martin Larralde, Jonas Simon Fleck, Ruby Ponnudurai, Alessio Milanese, Elisa Cappio Barazzone, Georg Zeller. bioRxiv 2021.05.03.442509; doi:10.1101/2021.05.03.442509