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FastANI

Summary of FastANI results from project: [mq_saccharopolyspora]

Description

Fast Whole-Genome Similarity (ANI) Estimation

Hierarchical Clustering based on ANI values

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Estimate Number of Clusters

Estimated number of clusters: 8

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ANI Clustermap

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References

  • Herman Saffar, O. 2022. An Approach for Choosing Number of Clusters for K-Means. www.medium.com

  • Jain, C., Rodriguez-R, L.M., Phillippy, A.M. et al. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nat Commun 9, 5114 (2018). https://doi.org/10.1038/s41467-018-07641-9