BiG-SLICE

Summary of BiG-SLICE results from project: [mq_saccharopolyspora]

Description

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data.

Usage

You can start the BiG-SLICE flask app to view the clustering result.

Steps:

• Install the conda environment:

    conda install -f /data/matinnu/mq_saccharopolyspora/data/processed/mq_saccharopolyspora/docs/assets/envs/bigslice.yaml

• Run the app

    port='5001'
    conda run -n bigslice bash /data/matinnu/mq_saccharopolyspora/data/processed/mq_saccharopolyspora/cluster_as_7.1.0/start_server.sh $port

References

• Satria A Kautsar, Justin J J van der Hooft, Dick de Ridder, Marnix H Medema, BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters, GigaScience, Volume 10, Issue 1, January 2021, giaa154