autoMLST Wrapper
Summary of autoMLST Wrapper results from project: [mq_saccharopolyspora]
Description
This report provides an overview of the result from autoMLST Wrapper, a modified version of autoMLST tailored for simplified usability. By integrating a straightforward wrapper script, this fork eliminates the need for additional organism selection steps, streamlining the process for users.
Visualization
The tree visualization represents the phylogenetic relationships between various strains of the genus. This visualization aids in understanding the genetic diversity and evolutionary history of these genomes.
| genome_id | genus_original | species_original | strain | phylum | class | order | family | genus | species |
|---|---|---|---|---|---|---|---|---|---|
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Interactive Visualization with iTOL
For an enhanced, interactive visualization experience, users are encouraged to download the tree file and the corresponding annotation table. These files can be uploaded to iTOL (Interactive Tree Of Life), a web-based tool for the display, manipulation, and annotation of phylogenetic trees. Please check the iTOL help page for the upload guide and annotation format.
Download iTOL Tree Download iTOL Label Download iTOL Color
Download antiSMASH barchart Download BiG-SCAPE GCF presence Download BiG-SCAPE barchart
References
- Letunic I and Bork P (2021) Nucleic Acids Res doi: 10.1093/nar/gkab301 Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
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G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. doi: 10.1111/2041-210X.12628
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Mohammad Alanjary, Katharina Steinke, Nadine Ziemert, AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential,Nucleic Acids Research, Volume 47, Issue W1, 02 July 2019, Pages W276–W282